STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Coexpression
Experiments
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[Homology]
Score
FSU_0931Putative aspartoacylase; Identified by similarity to SP:P46446; match to protein family HMM PF04952. (300 aa)    
Predicted Functional Partners:
FSU_3272
Conserved domain protein; Identified by match to protein family HMM PF04685.
  
     0.725
FSU_2794
Fibrobacter succinogenes major paralogous domain protein; Identified by match to protein family HMM TIGR02145.
  
     0.691
FSU_2030
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
     0.669
FSU_0929
Hydrolase, haloacid dehalogenase family; Identified by match to protein family HMM PF00702.
 
     0.631
FSU_2932
Cadherin domain protein; Identified by match to protein family HMM PF00028.
  
     0.626
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
     
  0.615
ald
Aldehyde dehydrogenase; Identified by similarity to SP:P46329; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.592
FSU_2931
Cadherin domain protein; Identified by match to protein family HMM PF00028.
  
     0.547
FSU_0930
Hypothetical protein; Identified by glimmer; putative.
       0.545
FSU_2147
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.508
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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