Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FSU_0013 | FSU_2125 | FSU_0013 | FSU_2125 | PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639. | Putative lipoprotein. | 0.598 |
FSU_0013 | FSU_3094 | FSU_0013 | FSU_3094 | PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639. | Conserved hypothetical protein; Identified by similarity to GB:AAO77240.1. | 0.608 |
FSU_0013 | FSU_3310 | FSU_0013 | FSU_3310 | PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639. | Putative membrane protein. | 0.545 |
FSU_0013 | surA | FSU_0013 | FSU_0941 | PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639. | Peptidyl-prolyl cis-trans isomerase SurA; Identified by similarity to SP:P21202; match to protein family HMM PF00639; match to protein family HMM PF09312. | 0.757 |
FSU_0101 | FSU_2125 | FSU_0101 | FSU_2125 | Putative lipoprotein. | Putative lipoprotein. | 0.765 |
FSU_0101 | FSU_3094 | FSU_0101 | FSU_3094 | Putative lipoprotein. | Conserved hypothetical protein; Identified by similarity to GB:AAO77240.1. | 0.756 |
FSU_0101 | FSU_3310 | FSU_0101 | FSU_3310 | Putative lipoprotein. | Putative membrane protein. | 0.763 |
FSU_0101 | surA | FSU_0101 | FSU_0941 | Putative lipoprotein. | Peptidyl-prolyl cis-trans isomerase SurA; Identified by similarity to SP:P21202; match to protein family HMM PF00639; match to protein family HMM PF09312. | 0.665 |
FSU_0939 | FSU_0942 | FSU_0939 | FSU_0942 | Hypothetical protein; Identified by glimmer; putative. | Conserved domain protein; Identified by similarity to SP:Q46105. | 0.697 |
FSU_0939 | ftsE | FSU_0939 | FSU_0940 | Hypothetical protein; Identified by glimmer; putative. | Cell division ABC transporter, ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. | 0.697 |
FSU_0939 | hrpA | FSU_0939 | FSU_0943 | Hypothetical protein; Identified by glimmer; putative. | ATP-dependent helicase HrpA; Identified by similarity to SP:P43329; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | 0.697 |
FSU_0939 | surA | FSU_0939 | FSU_0941 | Hypothetical protein; Identified by glimmer; putative. | Peptidyl-prolyl cis-trans isomerase SurA; Identified by similarity to SP:P21202; match to protein family HMM PF00639; match to protein family HMM PF09312. | 0.697 |
FSU_0942 | FSU_0939 | FSU_0942 | FSU_0939 | Conserved domain protein; Identified by similarity to SP:Q46105. | Hypothetical protein; Identified by glimmer; putative. | 0.697 |
FSU_0942 | ftsE | FSU_0942 | FSU_0940 | Conserved domain protein; Identified by similarity to SP:Q46105. | Cell division ABC transporter, ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. | 0.779 |
FSU_0942 | hrpA | FSU_0942 | FSU_0943 | Conserved domain protein; Identified by similarity to SP:Q46105. | ATP-dependent helicase HrpA; Identified by similarity to SP:P43329; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | 0.774 |
FSU_0942 | surA | FSU_0942 | FSU_0941 | Conserved domain protein; Identified by similarity to SP:Q46105. | Peptidyl-prolyl cis-trans isomerase SurA; Identified by similarity to SP:P21202; match to protein family HMM PF00639; match to protein family HMM PF09312. | 0.773 |
FSU_2125 | FSU_0013 | FSU_2125 | FSU_0013 | Putative lipoprotein. | PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639. | 0.598 |
FSU_2125 | FSU_0101 | FSU_2125 | FSU_0101 | Putative lipoprotein. | Putative lipoprotein. | 0.765 |
FSU_2125 | FSU_3094 | FSU_2125 | FSU_3094 | Putative lipoprotein. | Conserved hypothetical protein; Identified by similarity to GB:AAO77240.1. | 0.774 |
FSU_2125 | FSU_3310 | FSU_2125 | FSU_3310 | Putative lipoprotein. | Putative membrane protein. | 0.775 |
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