STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
surAPeptidyl-prolyl cis-trans isomerase SurA; Identified by similarity to SP:P21202; match to protein family HMM PF00639; match to protein family HMM PF09312. (427 aa)    
Predicted Functional Partners:
ftsE
Cell division ABC transporter, ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
       0.790
hrpA
ATP-dependent helicase HrpA; Identified by similarity to SP:P43329; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717.
  
    0.775
FSU_0942
Conserved domain protein; Identified by similarity to SP:Q46105.
       0.773
FSU_0013
PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639.
  
     0.757
FSU_3094
Conserved hypothetical protein; Identified by similarity to GB:AAO77240.1.
 
  
 0.733
FSU_3310
Putative membrane protein.
  
     0.718
FSU_0939
Hypothetical protein; Identified by glimmer; putative.
       0.697
FSU_2125
Putative lipoprotein.
  
    0.690
FSU_0101
Putative lipoprotein.
  
     0.665
FSU_2254
Two component regulator propeller family protein.
  
     0.656
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.