STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0957Conserved domain protein; Identified by similarity to GB:CAE10106.1; Belongs to the sulfur carrier protein TusA family. (182 aa)    
Predicted Functional Partners:
FSU_0861
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
   
 0.890
FSU_0955
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0956
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0569
Mov34/MPN/PAD-1 family protein; Identified by similarity to GB:CAE10107.1; match to protein family HMM PF01398.
 
     0.758
FSU_0570
Identified by match to protein family HMM PF01398.
 
     0.740
FSU_0573
Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356.
  
 
 0.727
thiS_2
Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683.
 
 
   0.705
FSU_2156
Phosphoadenosine phosphosulfate reductase domain protein; Identified by match to protein family HMM PF01507.
  
 
  0.621
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.577
FSU_0954
Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.
     
 0.553
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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