STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0964Putative bacterial type II/III secretion system protein; Identified by similarity to SP:P03666; match to protein family HMM PF00263; match to protein family HMM PF03958. (585 aa)    
Predicted Functional Partners:
FSU_2501
GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.809
FSU_0434
MotA/TolQ/ExbB proton channel family protein; Identified by similarity to OMNI:VC1547; match to protein family HMM PF01618.
  
    0.735
FSU_0703
Type II secretion system protein; Identified by match to protein family HMM PF00437.
 
  
 0.728
FSU_2235
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
    0.715
FSU_1356
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
    0.712
FSU_1355
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
    0.705
FSU_1701
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.686
FSU_3107
Putative general secretion pathway protein E; Identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157.
 
  
 0.680
pilC
Pilus assembly protein PilC; Identified by similarity to PIR:B35384; match to protein family HMM PF00482.
 
  
 0.666
FSU_0963
Hypothetical protein; Identified by glimmer; putative.
       0.631
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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