STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
FSU_0964Putative bacterial type II/III secretion system protein; Identified by similarity to SP:P03666; match to protein family HMM PF00263; match to protein family HMM PF03958. (585 aa)    
Predicted Functional Partners:
FSU_2501
GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.808
FSU_0434
MotA/TolQ/ExbB proton channel family protein; Identified by similarity to OMNI:VC1547; match to protein family HMM PF01618.
  
    0.737
FSU_0703
Type II secretion system protein; Identified by match to protein family HMM PF00437.
 
  
 0.718
FSU_2235
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
    0.716
FSU_1356
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
    0.713
FSU_0658
Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.
 
  
0.707
FSU_1355
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
    0.706
FSU_1701
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.687
FSU_3107
Putative general secretion pathway protein E; Identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157.
 
  
 0.669
pilC
Pilus assembly protein PilC; Identified by similarity to PIR:B35384; match to protein family HMM PF00482.
 
  
 0.651
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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