STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0976Putative metal ABC transporter, periplasmic metal-binding adhesion liprotein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. (290 aa)    
Predicted Functional Partners:
FSU_0975
Putative metal ABC transporter, ATP-binding protein; Identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005.
 
 
 0.991
FSU_3083
Putative metal ABC transporter, permease protein; Identified by similarity to GB:AAD56938.1; match to protein family HMM PF00950.
 
 0.968
FSU_1655
Putative metal ABC transporter, permease protein; Identified by match to protein family HMM PF00950.
 
 
 0.949
FSU_1654
Putative metal ABC transporter, ATP-binding protein; Identified by similarity to SP:Q9PJX9; match to protein family HMM PF00005.
 
 
 0.944
FSU_0977
HAD-superfamily hydrolase, subfamily IIA; Identified by match to protein family HMM PF00702.
       0.773
FSU_0974
Conserved hypothetical protein; Identified by similarity to GB:AAO90578.1.
       0.686
FSU_2223
Putative membrane protein; Identified by match to protein family HMM PF02535.
 
    
 0.613
FSU_0978
Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.585
FSU_2166
Iron-dependent repressor; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742.
  
 
 0.568
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.542
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.