STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1003ompA family protein; Identified by similarity to PIR:B82819; match to protein family HMM PF00691; match to protein family HMM PF02412. (756 aa)    
Predicted Functional Partners:
FSU_0285
Putative chemotaxis MotB protein; Identified by similarity to SP:P28612; match to protein family HMM PF00691.
  
 0.720
guaA
GMP synthase; Identified by similarity to SP:P04079; match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00888.
  
 
  0.568
FSU_1004
Hypothetical protein; Identified by glimmer; putative.
 
 
   0.511
FSU_2502
Fibro-slime domain protein; Identified by match to protein family HMM TIGR02148.
      
 0.498
FSU_3052
Fibro-slime domain protein; Identified by similarity to PIR:C95146; similarity to GB:BAB47241.1; match to protein family HMM TIGR02148.
      
 0.498
lepB
Signal peptidase I; Identified by similarity to SP:P00803; match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.
  
  
 0.487
FSU_2655
Outer membrane protein, OmpH family; Identified by similarity to GB:AAD23980.1; match to protein family HMM PF03938.
 
 
 0.426
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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