STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1009Conserved hypothetical protein; Identified by similarity to PIR:C97301; match to protein family HMM PF09579. (111 aa)    
Predicted Functional Partners:
FSU_0800
Stage V sporulation protein G-like protein; Identified by similarity to SP:P28015; Belongs to the SpoVG family.
  
     0.559
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
 
     0.551
FSU_2957
Stage II sporulation protein D-like protein; Identified by similarity to SP:P07372; similarity to SP:Q02113; match to protein family HMM PF08486; match to protein family HMM TIGR02669.
  
    0.551
FSU_1010
Putative lipoprotein.
       0.496
FSU_1011
Hypothetical protein; Identified by glimmer; putative.
       0.482
FSU_0386
Conserved hypothetical protein TIGR00255; Identified by similarity to PIR:G97111; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.
 
     0.420
spmAB
Spore maturation protein AB; Identified by similarity to SP:P35157; similarity to SP:P35158; match to protein family HMM PF07670.
 
  
 0.416
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.