STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1022Conserved domain protein; Identified by match to protein family HMM PF03781. (815 aa)    
Predicted Functional Partners:
FSU_1021
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_3147
Conserved domain protein; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
  
     0.741
FSU_2923
Putative lipoprotein, TIGR02171; Identified by match to protein family HMM TIGR02171.
  
     0.711
FSU_0027
Hypothetical protein; Identified by glimmer; putative.
  
     0.707
FSU_0820
Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM TIGR02171.
  
     0.705
FSU_1244
Putative lipoprotein, TIGR02171; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
  
     0.689
FSU_3144
Putative lipoprotein, TIGR02171; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
  
     0.639
FSU_1023
UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
 
     0.627
FSU_0252
Identified by match to protein family HMM PF00023.
  
     0.567
FSU_2932
Cadherin domain protein; Identified by match to protein family HMM PF00028.
  
     0.567
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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