STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1031Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (197 aa)    
Predicted Functional Partners:
FSU_1032
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
  
 0.790
FSU_1033
Putative chloramphenicol acetyltransferase; Identified by similarity to SP:P00484; match to protein family HMM PF00302.
       0.668
FSU_3151
Identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241.
     
 0.571
FSU_1036
Conserved hypothetical protein; Identified by similarity to GB:AAO76294.1.
 
     0.537
FSU_1034
Conserved domain protein; Identified by similarity to GB:AAL95231.1.
       0.488
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.