STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1032Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (173 aa)    
Predicted Functional Partners:
FSU_1921
Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.
 
  
 0.894
FSU_1031
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
  
 0.791
FSU_0354
Conserved hypothetical protein; Identified by similarity to PIR:H97271.
      0.750
mutX
Mutator mutT protein; Identified by similarity to SP:P41354; match to protein family HMM PF00293.
 
    0.736
FSU_1033
Putative chloramphenicol acetyltransferase; Identified by similarity to SP:P00484; match to protein family HMM PF00302.
       0.668
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.667
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
   
 
 0.653
nifJ
Pyruvate synthase; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
  0.647
FSU_1626
Identified by match to protein family HMM PF01564.
  
 
 0.632
FSU_2327
Conserved hypothetical protein; Identified by similarity to GB:AAO35972.1.
 
      0.629
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (14%) [HD]