STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1033Putative chloramphenicol acetyltransferase; Identified by similarity to SP:P00484; match to protein family HMM PF00302. (207 aa)    
Predicted Functional Partners:
FSU_1031
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
       0.668
FSU_1032
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.668
FSU_1034
Conserved domain protein; Identified by similarity to GB:AAL95231.1.
       0.558
FSU_2496
Identified by match to protein family HMM PF01522.
  
     0.549
FSU_1035
Bacterial transcription activator family protein.
 
     0.456
FSU_0739
Conserved domain protein; Identified by similarity to GB:AAL95675.1; match to protein family HMM PF04607.
  
     0.450
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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