STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1034Conserved domain protein; Identified by similarity to GB:AAL95231.1. (405 aa)    
Predicted Functional Partners:
FSU_1036
Conserved hypothetical protein; Identified by similarity to GB:AAO76294.1.
 
     0.717
FSU_0183
Putative iron-sulfur flavoprotein; Identified by similarity to GB:AAC45465.1; match to protein family HMM PF03358.
  
     0.610
FSU_1419
Conserved hypothetical protein; Identified by similarity to GB:AAM05241.1.
  
     0.584
FSU_0114
Hypothetical protein; Identified by glimmer; putative.
  
     0.568
FSU_2239
Conserved hypothetical protein; Identified by similarity to GB:AAQ66278.1.
  
     0.566
FSU_1033
Putative chloramphenicol acetyltransferase; Identified by similarity to SP:P00484; match to protein family HMM PF00302.
       0.558
FSU_1638
Hypothetical protein; Identified by glimmer; putative.
  
     0.557
FSU_0398
Conserved hypothetical protein; Identified by similarity to GB:AAS12525.1.
  
     0.496
FSU_1031
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
     
 0.492
FSU_2237
Putative transporter; Identified by similarity to GB:AAQ66280.1.
  
     0.491
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.