Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1068Hypothetical protein; Identified by glimmer; putative. (338 aa)    
Predicted Functional Partners:
recG
ATP-dependent DNA helicase RecG; Identified by similarity to SP:Q54900; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; match to protein family HMM PF04851.
       0.773
FSU_1094
Conserved hypothetical protein.
  
 0.674
argG
Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
    0.508
FSU_1066
Conserved hypothetical protein; Identified by similarity to GB:AAM72904.1; match to protein family HMM PF09603; match to protein family HMM TIGR02145.
       0.504
FSU_1181
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.452
FSU_1607
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.452
FSU_2763
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.452
FSU_2761
Putative lipoprotein.
  
  0.432
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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