Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1078Streptogramin A acetyltransferase; Identified by similarity to SP:P26839; similarity to GB:AAN77593.1; match to protein family HMM PF00132. (214 aa)    
Predicted Functional Partners:
FSU_3261
Sugar epimerase family protein; Identified by similarity to GB:AAC46089.1; match to protein family HMM PF01370; match to protein family HMM PF07993.
  
 
 0.626
FSU_2799
Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
  
  
 0.593
recQ
ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.
       0.558
FSU_1076
Putative membrane protein; Identified by similarity to GB:AAK04020.1.
       0.459
FSU_1077
Conserved hypothetical protein; Identified by similarity to GB:AAN24294.1.
       0.459
FSU_0499
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to SP:P14290; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.413
FSU_0637
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to SP:P15263; match to protein family HMM PF00155; match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.413
FSU_2589
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; match to protein family HMM TIGR02379; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.413
FSU_3218
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.413
FSU_3240
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.413
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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