Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FSU_1087 | FSU_1088 | FSU_1087 | FSU_1088 | HD domain protein; Identified by match to protein family HMM PF01966. | Putative lipoprotein. | 0.477 |
FSU_1087 | FSU_1089 | FSU_1087 | FSU_1089 | HD domain protein; Identified by match to protein family HMM PF01966. | Hypothetical protein; Identified by glimmer; putative. | 0.450 |
FSU_1088 | FSU_1087 | FSU_1088 | FSU_1087 | Putative lipoprotein. | HD domain protein; Identified by match to protein family HMM PF01966. | 0.477 |
FSU_1088 | FSU_1089 | FSU_1088 | FSU_1089 | Putative lipoprotein. | Hypothetical protein; Identified by glimmer; putative. | 0.723 |
FSU_1088 | FSU_1090 | FSU_1088 | FSU_1090 | Putative lipoprotein. | Identified by match to protein family HMM PF01207. | 0.526 |
FSU_1089 | FSU_1087 | FSU_1089 | FSU_1087 | Hypothetical protein; Identified by glimmer; putative. | HD domain protein; Identified by match to protein family HMM PF01966. | 0.450 |
FSU_1089 | FSU_1088 | FSU_1089 | FSU_1088 | Hypothetical protein; Identified by glimmer; putative. | Putative lipoprotein. | 0.723 |
FSU_1089 | FSU_1090 | FSU_1089 | FSU_1090 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM PF01207. | 0.559 |
FSU_1089 | hup_2 | FSU_1089 | FSU_1091 | Hypothetical protein; Identified by glimmer; putative. | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.406 |
FSU_1090 | FSU_1088 | FSU_1090 | FSU_1088 | Identified by match to protein family HMM PF01207. | Putative lipoprotein. | 0.526 |
FSU_1090 | FSU_1089 | FSU_1090 | FSU_1089 | Identified by match to protein family HMM PF01207. | Hypothetical protein; Identified by glimmer; putative. | 0.559 |
FSU_1090 | hup_2 | FSU_1090 | FSU_1091 | Identified by match to protein family HMM PF01207. | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.549 |
hup_2 | FSU_1089 | FSU_1091 | FSU_1089 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Hypothetical protein; Identified by glimmer; putative. | 0.406 |
hup_2 | FSU_1090 | FSU_1091 | FSU_1090 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Identified by match to protein family HMM PF01207. | 0.549 |