STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1094Conserved hypothetical protein. (192 aa)    
Predicted Functional Partners:
FSU_1095
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
     0.912
FSU_1068
Hypothetical protein; Identified by glimmer; putative.
  
 0.674
FSU_1449
Identified by match to protein family HMM PF02470.
  
 0.674
FSU_1697
Identified by match to protein family HMM PF02470.
  
 0.674
FSU_2141
Identified by match to protein family HMM PF02470.
  
 0.674
FSU_2762
Identified by match to protein family HMM PF02470.
  
 0.674
FSU_2686
Identified by match to protein family HMM PF01694.
  
     0.619
FSU_0102
Putative membrane protein.
 
     0.553
FSU_2424
Conserved hypothetical protein; Identified by similarity to GB:AAM25361.1.
  
     0.546
rsuA
Ribosomal small subunit pseudouridine synthase A; Identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.
       0.539
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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