| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| FSU_0573 | thiD | FSU_0573 | FSU_0410 | Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356. | Phosphomethylpyrimidine kinase; Identified by similarity to SP:P76422; match to protein family HMM PF08543. | 0.680 |
| FSU_0573 | truA | FSU_0573 | FSU_1108 | Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.813 |
| FSU_1109 | truA | FSU_1109 | FSU_1108 | Hypothetical protein; Identified by glimmer; putative. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.773 |
| FSU_2179 | truA | FSU_2179 | FSU_1108 | Putative cobalt ABC transporter, permease protein; Identified by match to protein family HMM PF02361. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.549 |
| mraW | truA | FSU_0997 | FSU_1108 | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.830 |
| rpmD | rpoC_1 | FSU_1872 | FSU_1450 | Ribosomal protein L30; Identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.851 |
| rpmD | truA | FSU_1872 | FSU_1108 | Ribosomal protein L30; Identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.520 |
| rpmD | truB | FSU_1872 | FSU_2845 | Ribosomal protein L30; Identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.586 |
| rpoC_1 | rpmD | FSU_1450 | FSU_1872 | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Ribosomal protein L30; Identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308. | 0.851 |
| rpoC_1 | truA | FSU_1450 | FSU_1108 | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.507 |
| rpoC_1 | truB | FSU_1450 | FSU_2845 | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.457 |
| tadA | tilS | FSU_0290 | FSU_0031 | Cytidine/deoxycytidylate deaminase zinc-binding domain protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.544 |
| tadA | truA | FSU_0290 | FSU_1108 | Cytidine/deoxycytidylate deaminase zinc-binding domain protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.511 |
| thiD | FSU_0573 | FSU_0410 | FSU_0573 | Phosphomethylpyrimidine kinase; Identified by similarity to SP:P76422; match to protein family HMM PF08543. | Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356. | 0.680 |
| thiD | truA | FSU_0410 | FSU_1108 | Phosphomethylpyrimidine kinase; Identified by similarity to SP:P76422; match to protein family HMM PF08543. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.542 |
| tilS | tadA | FSU_0031 | FSU_0290 | tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | Cytidine/deoxycytidylate deaminase zinc-binding domain protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.544 |
| tilS | truA | FSU_0031 | FSU_1108 | tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.507 |
| truA | FSU_0573 | FSU_1108 | FSU_0573 | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356. | 0.813 |
| truA | FSU_1109 | FSU_1108 | FSU_1109 | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| truA | FSU_2179 | FSU_1108 | FSU_2179 | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | Putative cobalt ABC transporter, permease protein; Identified by match to protein family HMM PF02361. | 0.549 |
