Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_1115Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422. (699 aa)    
Predicted Functional Partners:
FSU_2535
Conserved hypothetical protein; Identified by similarity to PIR:F87639.
  
 0.924
FSU_1114
Carbohydrate-binding protein, CBM 6 family; Identified by match to protein family HMM PF03422; match to protein family HMM PF09492; match to protein family HMM TIGR02474.
 
  
0.882
FSU_0577
Putative pectate lyase; Identified by match to protein family HMM PF00544.
  
 0.837
FSU_2525
Conserved domain protein; Identified by similarity to GB:AAO79221.1.
  
 0.834
FSU_3044
Carbohydrate-binding protein, CBM 6 family; Identified by similarity to GB:AAM39473.1; match to protein family HMM PF03422.
 
  
 0.818
FSU_3045
Lipase/acylhydrolase, GDSL family; Identified by match to protein family HMM PF00657.
 
  
 0.818
FSU_2518
Esterase domain protein; Identified by similarity to SP:Q00017.
 
  
 0.809
FSU_2181
Beta-1,4-mannanase, Man26A; Identified by similarity to SP:P55298; match to protein family HMM PF02156; match to protein family HMM PF03422; Belongs to the glycosyl hydrolase 26 family.
  
  
 0.771
FSU_2522
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616.
 
     0.771
FSU_3191
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616.
 
     0.771
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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