STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpxBlipid-A-disaccharide synthetase; Identified by similarity to SP:P10441; match to protein family HMM PF02684; Belongs to the LpxB family. (388 aa)    
Predicted Functional Partners:
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852.
 
 
 0.985
FSU_0363
Putative UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Identified by similarity to SP:P21645; match to protein family HMM PF00132.
 
 
 0.876
FSU_1964
Putative tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
  
 0.850
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.846
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Identified by similarity to SP:P04951; match to protein family HMM PF02348.
 
   
 0.820
FSU_2458
Putative 3-deoxy-D-manno-2-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
   
 0.814
dnaE
DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594.
     
 0.813
FSU_1701
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   
 0.757
FSU_1123
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.682
FSU_2812
Putative UDP-2,3-diacylglucosamine hydrolase; Identified by similarity to SP:P43341; match to protein family HMM PF00149.
 
  
 0.663
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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