STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1125Putative membrane protein; Identified by similarity to GB:BAC51186.1; match to protein family HMM PF03706; match to protein family HMM TIGR00374. (313 aa)    
Predicted Functional Partners:
FSU_0718
Putative membrane protein.
 
     0.672
FSU_2120
FG-GAP repeat protein; Identified by match to protein family HMM PF01839.
  
     0.500
FSU_3310
Putative membrane protein.
 
     0.485
FSU_1124
Putative lipoprotein.
       0.466
FSU_1123
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
 
     0.452
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
 
  
 0.437
FSU_1945
Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.
  
     0.429
FSU_0660
Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.
  
     0.425
FSU_2125
Putative lipoprotein.
  
     0.420
FSU_3094
Conserved hypothetical protein; Identified by similarity to GB:AAO77240.1.
  
     0.403
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.