STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1129Putative membrane protein; Identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374. (336 aa)    
Predicted Functional Partners:
FSU_1131
Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209; match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242.
 
     0.826
FSU_1130
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
 
    0.825
FSU_0718
Putative membrane protein.
 
     0.655
FSU_0660
Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.
  
     0.615
FSU_1128
UvrD/REP helicase domain protein/acyltransferase domain protein; Identified by match to protein family HMM PF00580; match to protein family HMM PF01553.
       0.590
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.581
FSU_2254
Two component regulator propeller family protein.
  
     0.537
FSU_3310
Putative membrane protein.
 
     0.536
FSU_0791
Putative lipoprotein; Identified by similarity to GB:AAM72991.1.
  
     0.487
FSU_2120
FG-GAP repeat protein; Identified by match to protein family HMM PF01839.
  
     0.480
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.