Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_1130Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534. (381 aa)    
Predicted Functional Partners:
FSU_1131
Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209; match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242.
 
     0.871
FSU_1129
Putative membrane protein; Identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374.
 
    0.824
FSU_1154
Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065; match to protein family HMM PF09210; Belongs to the glycosyl hydrolase 57 family.
 
 
 
  0.704
FSU_1128
UvrD/REP helicase domain protein/acyltransferase domain protein; Identified by match to protein family HMM PF00580; match to protein family HMM PF01553.
   
 0.663
FSU_0791
Putative lipoprotein; Identified by similarity to GB:AAM72991.1.
  
     0.615
FSU_3312
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
  
    0.608
FSU_3224
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.
  
     0.607
FSU_1215
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.600
FSU_0453
Identified by similarity to PIR:T48866; match to protein family HMM PF00483.
 
 
 0.592
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.581
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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