Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_1131Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209; match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242. (258 aa)    
Predicted Functional Partners:
FSU_1130
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
 
     0.871
FSU_1129
Putative membrane protein; Identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374.
 
     0.825
FSU_1128
UvrD/REP helicase domain protein/acyltransferase domain protein; Identified by match to protein family HMM PF00580; match to protein family HMM PF01553.
 
  
 0.696
FSU_2226
Conserved domain protein; Identified by similarity to PIR:C75569; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.
  
     0.599
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
   
   0.591
FSU_0051
acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.
    
 0.560
FSU_0592
acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.
     
 0.539
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.521
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
   
 0.487
FSU_1150
Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAC69533.1; match to protein family HMM PF01554; match to protein family HMM PF01943.
 
     0.442
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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