Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FSU_1150Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAC69533.1; match to protein family HMM PF01554; match to protein family HMM PF01943. (471 aa)    
Predicted Functional Partners:
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
 
     0.775
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
    0.774
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.767
FSU_2254
Two component regulator propeller family protein.
  
     0.762
FSU_0934
Putative transporter; Identified by similarity to GB:AAN68395.1.
  
     0.758
FSU_0382
Cellulase; Identified by similarity to GB:AAC45377.1; match to protein family HMM PF03425.
  
     0.752
FSU_0436
Conserved hypothetical protein; Identified by similarity to GB:BAC58430.1.
  
     0.752
FSU_1095
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.752
FSU_0161
Transcriptional regulator, PadR family; Identified by match to protein family HMM PF03551.
  
     0.744
FSU_0718
Putative membrane protein.
 
    0.737
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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