Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_1155Conserved hypothetical protein; Identified by similarity to GB:CAD78756.1. (397 aa)    
Predicted Functional Partners:
FSU_1154
Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065; match to protein family HMM PF09210; Belongs to the glycosyl hydrolase 57 family.
 
     0.931
FSU_1954
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
     0.742
FSU_0286
Fimbriae-associated domain protein; Identified by similarity to GP:3929312.
  
     0.734
FSU_0459
Conserved hypothetical protein.
  
 
   0.730
FSU_1110
Nuclease, ATP-dependent, OLD family.
  
     0.726
FSU_1953
Conserved domain protein; Identified by similarity to GB:CAD69025.1; match to protein family HMM TIGR02148.
  
     0.724
FSU_2397
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.719
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.715
FSU_1728
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
     0.715
FSU_1156
Hypothetical protein; Identified by glimmer; putative.
       0.705
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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