Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_1156Hypothetical protein; Identified by glimmer; putative. (414 aa)    
Predicted Functional Partners:
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
   
 
 0.844
FSU_1157
Putative lipoprotein.
       0.773
FSU_1318
Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254; match to protein family HMM PF01346.
    
 
 0.747
fklB
Peptidyl-prolyl cis-trans isomerase FklB; Identified by similarity to SP:P39311; similarity to SP:P51752; match to protein family HMM PF00254.
    
 
 0.747
FSU_2256
Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254.
    
 
 0.747
FSU_1154
Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065; match to protein family HMM PF09210; Belongs to the glycosyl hydrolase 57 family.
       0.705
FSU_1155
Conserved hypothetical protein; Identified by similarity to GB:CAD78756.1.
       0.705
FSU_0630
Hypothetical protein; Identified by glimmer; putative.
    
 
 0.456
FSU_1071
Hypothetical protein; Identified by glimmer; putative.
    
 
 0.456
FSU_1973
Conserved hypothetical protein; Identified by similarity to GB:BAC59619.1.
    
 
 0.456
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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