STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cysScysteine--tRNA ligase; Identified by similarity to SP:Q06752; match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family. (484 aa)    
Predicted Functional Partners:
FSU_0576
Putative serine acetyltransferase; Identified by similarity to SP:Q59967; match to protein family HMM PF00132.
 
  
 0.948
cysE
Serine acetyltransferase; Identified by similarity to SP:P05796; match to protein family HMM PF00132; match to protein family HMM PF06426.
 
  
 0.945
cysK_2
Cysteine synthase A; Identified by similarity to GB:AAG01002.1; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 0.894
cysK_1
Cysteine synthase A; Identified by similarity to GB:AAG01002.1; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139.
  
 0.883
FSU_1553
Cysteine synthase family protein; Identified by similarity to GB:AAG01002.1; match to protein family HMM PF00291.
  
 0.874
FSU_1538
Identified by similarity to SP:Q43725; match to protein family HMM PF00291.
  
 0.825
hisS
histidine--tRNA ligase; Identified by similarity to SP:P56194; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.
  
 
 0.802
FSU_1549
Identified by similarity to SP:Q9XEA8; match to protein family HMM PF00291.
  
 0.749
FSU_1054
Identified by similarity to SP:O23733; match to protein family HMM PF00291.
  
 0.701
leuS
leucine--tRNA ligase; Identified by similarity to SP:P36430; match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.683
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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