FSU_1203 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FSU_1203

Identified by match to protein family HMM PF00753. (218 aa)

Predicted Functional Partners:

FSU_0573

0.735

FSU_1204

0.605

FSU_3229

0.435

FSU_3303

0.434

FSU_1921

0.405

thiJ

0.400

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0573	FSU_1203	FSU_0573	FSU_1203	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356.	Identified by match to protein family HMM PF00753.	0.735
FSU_0573	FSU_1921	FSU_0573	FSU_1921	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356.	Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.	0.434
FSU_0573	thiJ	FSU_0573	FSU_2901	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356.	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; Identified by similarity to SP:Q46948; match to protein family HMM PF01965; match to protein family HMM TIGR01383.	0.478
FSU_1203	FSU_0573	FSU_1203	FSU_0573	Identified by match to protein family HMM PF00753.	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356.	0.735
FSU_1203	FSU_1204	FSU_1203	FSU_1204	Identified by match to protein family HMM PF00753.	Identified by match to protein family HMM PF01757.	0.605
FSU_1203	FSU_1921	FSU_1203	FSU_1921	Identified by match to protein family HMM PF00753.	Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.	0.405
FSU_1203	FSU_3229	FSU_1203	FSU_3229	Identified by match to protein family HMM PF00753.	Putative D-3-phosphoglycerate dehydrogenase; Identified by similarity to SP:O29445; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.435
FSU_1203	FSU_3303	FSU_1203	FSU_3303	Identified by match to protein family HMM PF00753.	Identified by match to protein family HMM PF00581.	0.434
FSU_1203	thiJ	FSU_1203	FSU_2901	Identified by match to protein family HMM PF00753.	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; Identified by similarity to SP:Q46948; match to protein family HMM PF01965; match to protein family HMM TIGR01383.	0.400
FSU_1204	FSU_1203	FSU_1204	FSU_1203	Identified by match to protein family HMM PF01757.	Identified by match to protein family HMM PF00753.	0.605
FSU_1921	FSU_0573	FSU_1921	FSU_0573	Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356.	0.434
FSU_1921	FSU_1203	FSU_1921	FSU_1203	Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.	Identified by match to protein family HMM PF00753.	0.405
FSU_1921	FSU_3229	FSU_1921	FSU_3229	Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.	Putative D-3-phosphoglycerate dehydrogenase; Identified by similarity to SP:O29445; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.440
FSU_1921	FSU_3303	FSU_1921	FSU_3303	Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.	Identified by match to protein family HMM PF00581.	0.425
FSU_1921	thiJ	FSU_1921	FSU_2901	Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; Identified by similarity to SP:Q46948; match to protein family HMM PF01965; match to protein family HMM TIGR01383.	0.619
FSU_3229	FSU_1203	FSU_3229	FSU_1203	Putative D-3-phosphoglycerate dehydrogenase; Identified by similarity to SP:O29445; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Identified by match to protein family HMM PF00753.	0.435
FSU_3229	FSU_1921	FSU_3229	FSU_1921	Putative D-3-phosphoglycerate dehydrogenase; Identified by similarity to SP:O29445; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.	0.440
FSU_3229	thiJ	FSU_3229	FSU_2901	Putative D-3-phosphoglycerate dehydrogenase; Identified by similarity to SP:O29445; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; Identified by similarity to SP:Q46948; match to protein family HMM PF01965; match to protein family HMM TIGR01383.	0.408
FSU_3303	FSU_1203	FSU_3303	FSU_1203	Identified by match to protein family HMM PF00581.	Identified by match to protein family HMM PF00753.	0.434
FSU_3303	FSU_1921	FSU_3303	FSU_1921	Identified by match to protein family HMM PF00581.	Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.	0.425