FSU_1210 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_1210

Hypothetical protein; Identified by glimmer; putative. (441 aa)

Predicted Functional Partners:

FSU_2433

0.582

FSU_0174

0.553

FSU_0960

0.553

FSU_1212

0.553

FSU_2567

0.553

FSU_2593

0.553

FSU_3205

0.553

gpmI

0.466

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0174	FSU_1210	FSU_0174	FSU_1210	Pilin domain protein; Identified by similarity to GB:AAA53563.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532.	Hypothetical protein; Identified by glimmer; putative.	0.553
FSU_0960	FSU_1210	FSU_0960	FSU_1210	Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	Hypothetical protein; Identified by glimmer; putative.	0.553
FSU_1210	FSU_0174	FSU_1210	FSU_0174	Hypothetical protein; Identified by glimmer; putative.	Pilin domain protein; Identified by similarity to GB:AAA53563.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.553
FSU_1210	FSU_0960	FSU_1210	FSU_0960	Hypothetical protein; Identified by glimmer; putative.	Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.553
FSU_1210	FSU_1212	FSU_1210	FSU_1212	Hypothetical protein; Identified by glimmer; putative.	Pilin domain protein; Identified by similarity to GB:CAB60734.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.553
FSU_1210	FSU_2433	FSU_1210	FSU_2433	Hypothetical protein; Identified by glimmer; putative.	Hypothetical protein; Identified by glimmer; putative.	0.582
FSU_1210	FSU_2567	FSU_1210	FSU_2567	Hypothetical protein; Identified by glimmer; putative.	Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.553
FSU_1210	FSU_2593	FSU_1210	FSU_2593	Hypothetical protein; Identified by glimmer; putative.	Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.553
FSU_1210	FSU_3205	FSU_1210	FSU_3205	Hypothetical protein; Identified by glimmer; putative.	Conserved hypothetical protein; Identified by match to protein family HMM PF05635.	0.553
FSU_1210	gpmI	FSU_1210	FSU_1209	Hypothetical protein; Identified by glimmer; putative.	2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the BPG-independent phosphoglycerate mutase family.	0.466
FSU_1212	FSU_1210	FSU_1212	FSU_1210	Pilin domain protein; Identified by similarity to GB:CAB60734.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532.	Hypothetical protein; Identified by glimmer; putative.	0.553
FSU_2433	FSU_1210	FSU_2433	FSU_1210	Hypothetical protein; Identified by glimmer; putative.	Hypothetical protein; Identified by glimmer; putative.	0.582
FSU_2567	FSU_1210	FSU_2567	FSU_1210	Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	Hypothetical protein; Identified by glimmer; putative.	0.553
FSU_2567	FSU_2593	FSU_2567	FSU_2593	Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.912
FSU_2593	FSU_1210	FSU_2593	FSU_1210	Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	Hypothetical protein; Identified by glimmer; putative.	0.553
FSU_2593	FSU_2567	FSU_2593	FSU_2567	Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.912
FSU_3205	FSU_1210	FSU_3205	FSU_1210	Conserved hypothetical protein; Identified by match to protein family HMM PF05635.	Hypothetical protein; Identified by glimmer; putative.	0.553
gpmI	FSU_1210	FSU_1209	FSU_1210	2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the BPG-independent phosphoglycerate mutase family.	Hypothetical protein; Identified by glimmer; putative.	0.466