STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1261Insecticidal toxin-like protein; Identified by match to protein family HMM PF01839; match to protein family HMM PF05593; match to protein family HMM TIGR03696. (2237 aa)    
Predicted Functional Partners:
FSU_1267
Insecticidal toxin-like protein.
 
 
 0.830
FSU_1259
BNR repeat domain protein; Identified by match to protein family HMM PF02012.
       0.658
FSU_1260
Hypothetical protein; Identified by glimmer; putative.
       0.658
FSU_3037
Putative lipoprotein; Identified by match to protein family HMM TIGR02148.
  
    0.618
FSU_2052
Esterase D domain protein; Identified by similarity to PIR:S36781.
  
     0.599
FSU_0343
Conserved domain protein; Identified by similarity to GB:AAP04919.1; overlaps another CDS with the same product name.
  
     0.595
FSU_3052
Fibro-slime domain protein; Identified by similarity to PIR:C95146; similarity to GB:BAB47241.1; match to protein family HMM TIGR02148.
  
    0.588
FSU_1794
Conserved domain protein; Identified by similarity to GB:AAO52378.1; match to protein family HMM TIGR02148.
  
    0.583
FSU_1795
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
    0.555
FSU_2468
Esterase domain protein; Identified by similarity to GB:CAC85738.1.
  
     0.546
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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