FSU_1296 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FSU_1296

Putative membrane protein; Identified by match to protein family HMM PF02405. (261 aa)

Predicted Functional Partners:

FSU_1181

0.928

FSU_2763

0.897

FSU_1449

0.829

FSU_1295

0.766

FSU_1607

0.760

FSU_1297

0.718

FSU_2690

0.681

FSU_1697

0.665

FSU_2654

0.625

FSU_2691

0.606

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
FSU_1181	FSU_1296	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative membrane protein; Identified by match to protein family HMM PF02405.	0.928
FSU_1181	FSU_1449	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Identified by match to protein family HMM PF02470.	0.793
FSU_1181	FSU_1697	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Identified by match to protein family HMM PF02470.	0.669
FSU_1181	FSU_2654	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.	0.445
FSU_1295	FSU_1296	Putative carboxyl-terminal protease; Identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.	Putative membrane protein; Identified by match to protein family HMM PF02405.	0.766
FSU_1295	FSU_1297	Putative carboxyl-terminal protease; Identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.	Conserved hypothetical protein; Identified by similarity to PIR:D72328.	0.708
FSU_1296	FSU_1181	Putative membrane protein; Identified by match to protein family HMM PF02405.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.928
FSU_1296	FSU_1295	Putative membrane protein; Identified by match to protein family HMM PF02405.	Putative carboxyl-terminal protease; Identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.	0.766
FSU_1296	FSU_1297	Putative membrane protein; Identified by match to protein family HMM PF02405.	Conserved hypothetical protein; Identified by similarity to PIR:D72328.	0.718
FSU_1296	FSU_1449	Putative membrane protein; Identified by match to protein family HMM PF02405.	Identified by match to protein family HMM PF02470.	0.829
FSU_1296	FSU_1607	Putative membrane protein; Identified by match to protein family HMM PF02405.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.760
FSU_1296	FSU_1697	Putative membrane protein; Identified by match to protein family HMM PF02405.	Identified by match to protein family HMM PF02470.	0.665
FSU_1296	FSU_2654	Putative membrane protein; Identified by match to protein family HMM PF02405.	Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.	0.625
FSU_1296	FSU_2690	Putative membrane protein; Identified by match to protein family HMM PF02405.	Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name.	0.681
FSU_1296	FSU_2691	Putative membrane protein; Identified by match to protein family HMM PF02405.	Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name.	0.606
FSU_1296	FSU_2763	Putative membrane protein; Identified by match to protein family HMM PF02405.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.897
FSU_1297	FSU_1295	Conserved hypothetical protein; Identified by similarity to PIR:D72328.	Putative carboxyl-terminal protease; Identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.	0.708
FSU_1297	FSU_1296	Conserved hypothetical protein; Identified by similarity to PIR:D72328.	Putative membrane protein; Identified by match to protein family HMM PF02405.	0.718
FSU_1449	FSU_1181	Identified by match to protein family HMM PF02470.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.793
FSU_1449	FSU_1296	Identified by match to protein family HMM PF02470.	Putative membrane protein; Identified by match to protein family HMM PF02405.	0.829