Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_1303Glycosyl hydrolase, family 13; Identified by match to protein family HMM PF00128. (419 aa)    
Predicted Functional Partners:
FSU_0835
Conserved hypothetical protein; Identified by similarity to GB:AAS06079.1.
 0.985
FSU_1304
Putative 4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446.
 
 
 0.977
FSU_2595
Glycogen synthase-like protein; Identified by similarity to SP:P39125; match to protein family HMM PF08323.
 
 
 0.741
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 0.595
glgP
Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 0.586
FSU_2150
Glycosyl hydrolase/glycosyltransferase; Identified by match to protein family HMM PF00150; match to protein family HMM PF00535.
    
 0.561
FSU_0127
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF08279.
  
 
 0.540
FSU_2272
Alpha-galactosidase; Identified by match to protein family HMM PF02065; match to protein family HMM PF03422.
  
 
 0.527
FSU_1047
Extracellular solute-binding protein; Identified by match to protein family HMM PF01547.
 
  
 0.525
FSU_2018
Conserved domain protein; Identified by similarity to PIR:G72204; match to protein family HMM PF02922.
  
 
 0.524
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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