STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1306Putative BatE protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (256 aa)    
Predicted Functional Partners:
FSU_1305
Putative BatD protein.
     0.950
FSU_1660
Conserved hypothetical protein; Identified by similarity to PIR:B87135; match to protein family HMM PF01882.
 
  
 0.783
FSU_1905
Conserved hypothetical protein; Identified by similarity to GB:AAM71309.1.
 
     0.773
FSU_1454
BatB protein; Identified by similarity to GP:4838139; match to protein family HMM PF00092.
 
   
 0.771
FSU_1457
BatA protein; Identified by similarity to GB:AAD30858.1; match to protein family HMM PF00092.
 
   
 0.759
FSU_2147
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.685
FSU_2192
Phosphate transporter family protein.
  
     0.685
FSU_2501
GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
 
 0.473
FSU_0657
Conserved hypothetical protein; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128.
 
     0.461
FSU_2861
Conserved domain protein; Identified by similarity to PIR:H71125; match to protein family HMM PF01882.
 
  
 0.447
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.