Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_1314Leucine-rich repeat domain protein; Identified by match to protein family HMM PF00560. (250 aa)    
Predicted Functional Partners:
FSU_1316
Identified by match to protein family HMM PF03572; overlaps another CDS with the same product name.
 
     0.662
FSU_1315
Identified by match to protein family HMM PF03572; overlaps another CDS with the same product name.
 
     0.625
FSU_0252
Identified by match to protein family HMM PF00023.
  
   
 0.461
FSU_1312
Hypothetical protein; Identified by glimmer; putative.
       0.451
FSU_1828
Conserved hypothetical protein; Identified by similarity to GB:BAB79866.1; match to protein family HMM PF08719; match to protein family HMM TIGR02464.
  
     0.421
FSU_2730
Protein kinase domain protein.
  
  
 0.409
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
      0.406
FSU_0496
Hypothetical protein; Identified by glimmer; putative.
  
     0.405
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
 
     0.401
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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