Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FSU_1326Hypothetical protein; Identified by glimmer; putative. (285 aa)    
Predicted Functional Partners:
FSU_1325
Hypothetical protein; Identified by glimmer; putative.
   
  
0.778
FSU_1663
HD domain protein; Identified by match to protein family HMM PF01966.
 
      0.557
FSU_1324
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
    0.540
thiL
Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
     
 0.522
thiD
Phosphomethylpyrimidine kinase; Identified by similarity to SP:P76422; match to protein family HMM PF08543.
     
 0.521
FSU_2329
Conserved domain protein; Identified by similarity to GB:BAC15296.1.
    
  0.476
FSU_1327
Conserved hypothetical protein; Identified by similarity to GB:AAM72023.1; match to protein family HMM PF04298.
       0.449
FSU_0144
Hypothetical protein; Identified by glimmer; putative.
     
 0.440
thiE
Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
     
 0.440
FSU_1427
Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.
    
 0.422
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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