STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1328Putative transporter; Identified by similarity to GB:AAQ65338.1. (393 aa)    
Predicted Functional Partners:
FSU_1330
Conserved hypothetical protein; Identified by similarity to GB:AAO79009.1; match to protein family HMM PF00529.
  
 0.951
FSU_1331
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
   
 0.930
FSU_1329
Putative membrane protein.
 
    
0.841
FSU_1466
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.668
FSU_3055
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.668
FSU_1327
Conserved hypothetical protein; Identified by similarity to GB:AAM72023.1; match to protein family HMM PF04298.
       0.529
FSU_0108
Nitroreductase family protein; Identified by similarity to SP:O30013; match to protein family HMM PF00881.
  
    0.512
FSU_1362
Conserved hypothetical protein; Identified by similarity to PIR:A96992.
  
    0.512
FSU_1991
Nitroreductase family protein; Identified by similarity to GB:AAG14888.1; match to protein family HMM PF00881.
  
    0.512
FSU_2773
Conserved hypothetical protein; Identified by similarity to GB:BAC91411.1.
  
    0.512
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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