Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FSU_1337Conserved hypothetical protein; Identified by similarity to GB:BAB97452.1. (227 aa)    
Predicted Functional Partners:
FSU_1334
Conserved hypothetical protein; Identified by similarity to GB:AAM05601.1; match to protein family HMM PF09359.
 
    0.956
FSU_2651
Conserved domain protein; Identified by similarity to GB:AAQ66639.1; match to protein family HMM PF08757.
 
     0.697
FSU_2415
Putative lipoprotein; Identified by match to protein family HMM PF08757.
 
     0.694
FSU_1444
Hypothetical protein; Identified by glimmer; putative.
 
     0.674
FSU_0080
Hypothetical protein; Identified by glimmer; putative.
  
     0.663
FSU_3317
Putative lipoprotein.
 
     0.617
FSU_1198
Conserved domain protein.
 
     0.565
FSU_0578
Putative lipoprotein.
 
     0.555
FSU_0911
Conserved domain protein; Identified by match to protein family HMM PF08757.
 
     0.519
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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