Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
FSU_1350Conserved hypothetical protein; Identified by similarity to GB:CAD30163.1. (302 aa)    
Predicted Functional Partners:
FSU_0205
Conserved domain protein; Identified by similarity to GB:AAN49025.1.
  
     0.775
FSU_0542
Conserved hypothetical protein; Identified by similarity to GB:AAO77137.1.
  
     0.775
FSU_2154
Conserved hypothetical protein; Identified by similarity to GB:CAD30113.1.
  
     0.775
FSU_3015
Conserved hypothetical protein; Identified by similarity to GB:AAO77137.1.
  
     0.775
FSU_3259
Conserved hypothetical protein; Identified by similarity to GB:AAO58540.1; match to protein family HMM PF02463.
  
     0.505
FSU_3217
Conserved domain protein; Identified by similarity to GB:AAO77512.1.
  
     0.446
FSU_3147
Conserved domain protein; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
  
     0.445
FSU_2041
CRISPR-associated protein, TM1811 family.
  
     0.443
FSU_3145
Putative lipoprotein; Identified by match to protein family HMM PF03781; match to protein family HMM PF07676; match to protein family HMM TIGR02171.
  
     0.439
FSU_1359
Conserved domain protein; Identified by similarity to GB:AAO77279.1; match to protein family HMM PF07715.
 
     0.411
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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