Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
FSU_0402 | FSU_0522 | Conserved domain protein; Identified by similarity to PIR:T07884. | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | 0.725 |
FSU_0402 | FSU_0791 | Conserved domain protein; Identified by similarity to PIR:T07884. | Putative lipoprotein; Identified by similarity to GB:AAM72991.1. | 0.726 |
FSU_0402 | FSU_1150 | Conserved domain protein; Identified by similarity to PIR:T07884. | Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAC69533.1; match to protein family HMM PF01554; match to protein family HMM PF01943. | 0.651 |
FSU_0402 | FSU_1310 | Conserved domain protein; Identified by similarity to PIR:T07884. | Hypothetical protein; Identified by glimmer; putative. | 0.789 |
FSU_0402 | FSU_1366 | Conserved domain protein; Identified by similarity to PIR:T07884. | Conserved hypothetical protein; Identified by similarity to GB:AAM71308.1; match to protein family HMM PF09603; match to protein family HMM TIGR02145. | 0.447 |
FSU_0402 | FSU_2125 | Conserved domain protein; Identified by similarity to PIR:T07884. | Putative lipoprotein. | 0.771 |
FSU_0402 | FSU_2254 | Conserved domain protein; Identified by similarity to PIR:T07884. | Two component regulator propeller family protein. | 0.769 |
FSU_0402 | FSU_3310 | Conserved domain protein; Identified by similarity to PIR:T07884. | Putative membrane protein. | 0.771 |
FSU_0522 | FSU_0402 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | Conserved domain protein; Identified by similarity to PIR:T07884. | 0.725 |
FSU_0522 | FSU_0791 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | Putative lipoprotein; Identified by similarity to GB:AAM72991.1. | 0.410 |
FSU_0522 | FSU_1150 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAC69533.1; match to protein family HMM PF01554; match to protein family HMM PF01943. | 0.767 |
FSU_0522 | FSU_1310 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | Hypothetical protein; Identified by glimmer; putative. | 0.804 |
FSU_0522 | FSU_1366 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | Conserved hypothetical protein; Identified by similarity to GB:AAM71308.1; match to protein family HMM PF09603; match to protein family HMM TIGR02145. | 0.481 |
FSU_0522 | FSU_2125 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | Putative lipoprotein. | 0.672 |
FSU_0522 | FSU_2254 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | Two component regulator propeller family protein. | 0.758 |
FSU_0522 | FSU_3310 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | Putative membrane protein. | 0.621 |
FSU_0791 | FSU_0402 | Putative lipoprotein; Identified by similarity to GB:AAM72991.1. | Conserved domain protein; Identified by similarity to PIR:T07884. | 0.726 |
FSU_0791 | FSU_0522 | Putative lipoprotein; Identified by similarity to GB:AAM72991.1. | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | 0.410 |
FSU_0791 | FSU_1150 | Putative lipoprotein; Identified by similarity to GB:AAM72991.1. | Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAC69533.1; match to protein family HMM PF01554; match to protein family HMM PF01943. | 0.679 |
FSU_0791 | FSU_1310 | Putative lipoprotein; Identified by similarity to GB:AAM72991.1. | Hypothetical protein; Identified by glimmer; putative. | 0.752 |
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