STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1373Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422. (641 aa)    
Predicted Functional Partners:
FSU_3006
Putative endo-1,4-beta-xylanase; Identified by similarity to SP:P35811; match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.742
xynC
Endo-1,4-beta-xylanase; Cleaves xylans with the production of xylose, xylobiose and xylo-oligosaccharides.
  
     0.741
FSU_2496
Identified by match to protein family HMM PF01522.
  
     0.727
FSU_2516
Putative pectate lyase; Identified by similarity to PIR:JC7271.
  
     0.727
FSU_2741
Putative xylanase; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.721
FSU_0206
Xylanase; Identified by similarity to GB:AAB53151.1; match to protein family HMM PF02055; Belongs to the glycosyl hydrolase 30 family.
  
     0.694
FSU_3135
Pectate lyase family protein/carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF00544; match to protein family HMM PF03422.
  
     0.686
FSU_0889
Putative xylanase; Identified by similarity to GB:AAC27700.1; match to protein family HMM PF01270.
  
     0.679
FSU_1165
Beta-1,4-mannanase, man26B; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
  
     0.669
FSU_0577
Putative pectate lyase; Identified by match to protein family HMM PF00544.
  
     0.661
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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