STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1402PIN domain protein; Identified by match to protein family HMM PF01850; match to protein family HMM TIGR00305. (134 aa)    
Predicted Functional Partners:
FSU_1401
Hypothetical protein; Identified by glimmer; putative.
       0.781
FSU_1400
Conserved hypothetical protein; Identified by similarity to GB:BAB67269.1.
       0.563
FSU_3015
Conserved hypothetical protein; Identified by similarity to GB:AAO77137.1.
  
     0.446
FSU_0542
Conserved hypothetical protein; Identified by similarity to GB:AAO77137.1.
  
     0.431
FSU_1403
Conserved domain protein; Identified by similarity to GB:AAO76913.1.
       0.431
FSU_3152
Conserved domain protein; Identified by similarity to PIR:C97844.
  
     0.427
FSU_2154
Conserved hypothetical protein; Identified by similarity to GB:CAD30113.1.
  
     0.411
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.