STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1425UDP-glucuronate decarboxylase; Identified by similarity to GB:AAM22494.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993. (340 aa)    
Predicted Functional Partners:
FSU_2858
Putative dehydrogenase; Identified by similarity to SP:P77398; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
  
  
  0.969
ugd_2
UDP-glucose 6-dehydrogenase; Identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
 0.955
ugd_1
UDP-glucose 6-dehydrogenase; Identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.
 
 0.934
FSU_1426
Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01128; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
 
   
 0.929
FSU_2801
Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.
  
  
 
0.926
FSU_1408
Nucleotide sugar epimerase; Identified by similarity to GB:AAO32665.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
  
  
 
0.905
FSU_1436
Putative polysaccharide biosynthesis protein; Identified by similarity to SP:P39630; match to protein family HMM PF01073; match to protein family HMM PF01370.
 
     0.852
FSU_1427
Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.
  
  
 0.787
FSU_1428
Conserved hypothetical protein; Identified by similarity to GB:AAP76676.1.
  
    0.778
FSU_1429
Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAK20704.1; match to protein family HMM PF04488.
  
    0.778
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.