Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_1429Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAK20704.1; match to protein family HMM PF04488. (272 aa)    
Predicted Functional Partners:
FSU_1426
Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01128; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
       0.778
FSU_1428
Conserved hypothetical protein; Identified by similarity to GB:AAP76676.1.
       0.777
FSU_1425
UDP-glucuronate decarboxylase; Identified by similarity to GB:AAM22494.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.
  
    0.776
FSU_1430
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.776
FSU_1427
Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.
       0.773
FSU_1431
Putative membrane protein.
       0.773
FSU_1433
Putative licD protein; Identified by similarity to GB:AAL77432.1; match to protein family HMM PF04991.
    
 0.681
FSU_1432
Putative lipopolysaccharide/O-antigen transporter; Identified by similarity to SP:P37746; match to protein family HMM PF01943; match to protein family HMM PF03023.
 
    0.655
FSU_3245
Putative O-antigen polymerase; Identified by similarity to GB:AAK64372.1.
 
     0.513
FSU_2576
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
 
    0.486
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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