Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_1432Putative lipopolysaccharide/O-antigen transporter; Identified by similarity to SP:P37746; match to protein family HMM PF01943; match to protein family HMM PF03023. (485 aa)    
Predicted Functional Partners:
glf
UDP-galactopyranose mutase; Identified by similarity to SP:P37747; match to protein family HMM PF03275; match to protein family HMM TIGR00031.
 
  
 0.862
FSU_1440
Putative polysaccharide biosynthesis protein; Identified by similarity to GB:AAK61900.1.
 
  
 0.811
FSU_1433
Putative licD protein; Identified by similarity to GB:AAL77432.1; match to protein family HMM PF04991.
 
   
 0.777
ugd_2
UDP-glucose 6-dehydrogenase; Identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.734
rfbB
dTDP-glucose 4,6-dehydratase; Identified by similarity to SP:P37777; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01181.
  
  
 0.670
FSU_2799
Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
 
  
 0.659
FSU_1429
Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAK20704.1; match to protein family HMM PF04488.
 
    0.655
FSU_3261
Sugar epimerase family protein; Identified by similarity to GB:AAC46089.1; match to protein family HMM PF01370; match to protein family HMM PF07993.
  
  
 0.640
FSU_1439
Putative phosphoenolpyruvate mutase; Identified by similarity to GB:AAG26465.1; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02320.
       0.615
FSU_1426
Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01128; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
 
    0.606
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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