STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1433Putative licD protein; Identified by similarity to GB:AAL77432.1; match to protein family HMM PF04991. (274 aa)    
Predicted Functional Partners:
FSU_1426
Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01128; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
   
 0.816
FSU_1432
Putative lipopolysaccharide/O-antigen transporter; Identified by similarity to SP:P37746; match to protein family HMM PF01943; match to protein family HMM PF03023.
 
   
 0.778
FSU_1425
UDP-glucuronate decarboxylase; Identified by similarity to GB:AAM22494.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.
 
     0.719
FSU_1438
Putative phosphoenolpyruvate decarboxylase; Identified by similarity to SP:O86938; match to protein family HMM PF02775; match to protein family HMM TIGR03297.
 
     0.717
FSU_1439
Putative phosphoenolpyruvate mutase; Identified by similarity to GB:AAG26465.1; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02320.
 
     0.717
FSU_1436
Putative polysaccharide biosynthesis protein; Identified by similarity to SP:P39630; match to protein family HMM PF01073; match to protein family HMM PF01370.
 
     0.697
FSU_1435
licC domain protein; Identified by similarity to PIR:H98014.
     
 0.683
FSU_1434
Conserved hypothetical protein; Identified by similarity to GB:BAB54977.1.
       0.634
FSU_1437
Identified by match to protein family HMM PF00149.
       0.621
FSU_1427
Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.
 
     0.612
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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