STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1435licC domain protein; Identified by similarity to PIR:H98014. (247 aa)    
Predicted Functional Partners:
FSU_1438
Putative phosphoenolpyruvate decarboxylase; Identified by similarity to SP:O86938; match to protein family HMM PF02775; match to protein family HMM TIGR03297.
    
  0.905
FSU_1439
Putative phosphoenolpyruvate mutase; Identified by similarity to GB:AAG26465.1; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02320.
  
 
  0.884
FSU_1434
Conserved hypothetical protein; Identified by similarity to GB:BAB54977.1.
       0.779
FSU_1436
Putative polysaccharide biosynthesis protein; Identified by similarity to SP:P39630; match to protein family HMM PF01073; match to protein family HMM PF01370.
       0.773
FSU_1437
Identified by match to protein family HMM PF00149.
       0.752
FSU_1428
Conserved hypothetical protein; Identified by similarity to GB:AAP76676.1.
  
  
 0.719
FSU_1433
Putative licD protein; Identified by similarity to GB:AAL77432.1; match to protein family HMM PF04991.
     
 0.686
FSU_1440
Putative polysaccharide biosynthesis protein; Identified by similarity to GB:AAK61900.1.
       0.637
FSU_1432
Putative lipopolysaccharide/O-antigen transporter; Identified by similarity to SP:P37746; match to protein family HMM PF01943; match to protein family HMM PF03023.
       0.602
FSU_1441
UDP-N-acetylglucosamine 4-epimerase; Identified by similarity to SP:Q8X7P7; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
       0.593
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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