STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1438Putative phosphoenolpyruvate decarboxylase; Identified by similarity to SP:O86938; match to protein family HMM PF02775; match to protein family HMM TIGR03297. (375 aa)    
Predicted Functional Partners:
FSU_1439
Putative phosphoenolpyruvate mutase; Identified by similarity to GB:AAG26465.1; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02320.
 
 0.999
ilvN
Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.
  
 
 0.974
maeB
NADP-dependent malic enzyme; Identified by similarity to SP:P76558; match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949.
  
  
 0.894
ilvC
Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.
  
  
 0.809
FSU_1436
Putative polysaccharide biosynthesis protein; Identified by similarity to SP:P39630; match to protein family HMM PF01073; match to protein family HMM PF01370.
 
   
 0.807
FSU_1437
Identified by match to protein family HMM PF00149.
       0.792
FSU_1435
licC domain protein; Identified by similarity to PIR:H98014.
       0.775
ilvD
Dihydroxy-acid dehydratase; Identified by similarity to SP:P05791; match to protein family HMM PF00920; match to protein family HMM TIGR00110; Belongs to the IlvD/Edd family.
  
  
 0.772
FSU_1434
Conserved hypothetical protein; Identified by similarity to GB:BAB54977.1.
  
  
 0.770
FSU_1433
Putative licD protein; Identified by similarity to GB:AAL77432.1; match to protein family HMM PF04991.
 
     0.717
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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