trmH protein (Fibrobacter succinogenes) - STRING interaction network

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trmH

RNA methyltransferase, TrmH family; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (205 aa)

Predicted Functional Partners:

FSU_0910

0.704

FSU_1452

0.654

FSU_1453

0.614

rplM

0.613

FSU_1567

0.566

rplO

0.531

FSU_2137

0.527

rplC

0.514

FSU_0879

0.492

rplU

0.478

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0879	FSU_0910	FSU_0879	FSU_0910	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.492
FSU_0879	FSU_2137	FSU_0879	FSU_2137	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.492
FSU_0879	rplC	FSU_0879	FSU_1890	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.918
FSU_0879	rplM	FSU_0879	FSU_1421	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.916
FSU_0879	rplO	FSU_0879	FSU_1871	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.937
FSU_0879	rplU	FSU_0879	FSU_0312	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.935
FSU_0879	trmH	FSU_0879	FSU_1451	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	RNA methyltransferase, TrmH family; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.492
FSU_0910	FSU_0879	FSU_0910	FSU_0879	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	0.492
FSU_0910	FSU_1567	FSU_0910	FSU_1567	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Exoribonuclease, VacB/RNase II family; Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358.	0.511
FSU_0910	rplC	FSU_0910	FSU_1890	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.514
FSU_0910	rplM	FSU_0910	FSU_1421	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.499
FSU_0910	rplO	FSU_0910	FSU_1871	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.531
FSU_0910	rplU	FSU_0910	FSU_0312	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.478
FSU_0910	trmH	FSU_0910	FSU_1451	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	RNA methyltransferase, TrmH family; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.704
FSU_1452	FSU_1453	FSU_1452	FSU_1453	Hypothetical protein; Identified by glimmer; putative.	Peptidase M16 domain protein; Identified by match to protein family HMM PF05193.	0.681
FSU_1452	trmH	FSU_1452	FSU_1451	Hypothetical protein; Identified by glimmer; putative.	RNA methyltransferase, TrmH family; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.654
FSU_1453	FSU_1452	FSU_1453	FSU_1452	Peptidase M16 domain protein; Identified by match to protein family HMM PF05193.	Hypothetical protein; Identified by glimmer; putative.	0.681
FSU_1453	trmH	FSU_1453	FSU_1451	Peptidase M16 domain protein; Identified by match to protein family HMM PF05193.	RNA methyltransferase, TrmH family; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.614
FSU_1567	FSU_0910	FSU_1567	FSU_0910	Exoribonuclease, VacB/RNase II family; Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358.	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.511
FSU_1567	FSU_2137	FSU_1567	FSU_2137	Exoribonuclease, VacB/RNase II family; Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358.	RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.511

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