STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1463Twitching motility protein-like protein. (335 aa)    
Predicted Functional Partners:
pilC
Pilus assembly protein PilC; Identified by similarity to PIR:B35384; match to protein family HMM PF00482.
 
  
 0.796
FSU_1462
Conserved domain protein; Identified by similarity to GB:AAN53510.1.
  
    0.785
FSU_3107
Putative general secretion pathway protein E; Identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157.
 
  
 0.780
pilD
Type 4 prepilin-like protein leader peptide processing enzyme; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.
 
   
 0.767
FSU_0703
Type II secretion system protein; Identified by match to protein family HMM PF00437.
 
  
 0.756
FSU_0662
Putative type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726.
 
   
 0.489
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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