Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FSU_1466ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (303 aa)    
Predicted Functional Partners:
FSU_1465
Putative membrane protein; Identified by similarity to PIR:S76926.
 
 0.987
FSU_1555
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 
0.915
FSU_0511
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
  
 
0.838
FSU_2456
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.838
FSU_1467
Hypothetical protein; Identified by glimmer; putative.
       0.718
FSU_0975
Putative metal ABC transporter, ATP-binding protein; Identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005.
 
 
0.702
FSU_1688
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
  
 
0.700
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
0.699
FSU_1328
Putative transporter; Identified by similarity to GB:AAQ65338.1.
  
 
 0.668
FSU_1329
Putative membrane protein.
  
 
 0.668
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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